Publications

  1. DA Rivera-Kohr, D Rodriguez-Ramos, L Tanner, P Vo, NA Thalpur, HC Nielsen-Fox, FJ Shatara, CA Bingman, L Hou, BG Fox, ELW Majumder. Draft genome of the caprolactam-degrading Paenarthrobacter sp. CAP02 isolated from a landfill. Microbiology Resource Announcements. e00650-24 (2024). https://doi.org/10.1128/mra.00650-24   
  2. L Jia, A Juneja, ELW Majumder, BV Ramarao, D Kumar. Efficient Enzymatic Hydrolysis and Polyhydroxybutyrate Production from Non-Recyclable Fiber Rejects from Paper Mills by Recombinant Escherichia coli.  Processes. 12(8):1576 (2024). https://doi.org/10.3390/pr12081576  
  3. Shilva Shrestha; Shubhasish Goswami; Deepanwita Banerjee; Valentina Garcia; Elizabeth Zhou; Charles N. Olmsted; Erica Majumder; Deepak Kumar; Deepika Awasthi; Aindrila Mukhopadhyay; Steven W. Singer; John M. Gladden; Blake A. Simmons; Hemant Choudhary. Perspective on Lignin Conversion Strategies that Enable Next Generation Biorefineries. ChemSusChem. e202301460 (2024). https://doi.org/10.1002/cssc.202301460  
  4. HM Anderson, GA Cagle, EL-W Majumder, E Silva, JDawson, P Simon, ZB Freedman. Root exudation and rhizosphere microbial assembly are influenced by novel plant trait diversity in carrot genotypes. Soil Biology and Biochemistry. 197:109516 (2024). https://doi.org/10.1016/j.soilbio.2024.109516  
  5. CC. Chatman#, EG. Olson, A J. Freedman#, DK. Dittoe, SC. Ricke, EL-W. MajumderÑ. Co-exposure to Polyethylene Fiber and Salmonella enterica Typhimurium Alters Microbiome and Metabolome of in vitro Chicken Cecal Mesocosms. Applied and Environmental Microbiology, e00915-24, (2024). https://doi.org/10.1128/aem.00915-24  
  6. E. G. Olson, D. K. Dittoe, C. C. Chatman#, E. L.W. Majumder, S.C. Ricke. Campylobacter jejuni and casein hydrolysate addition: Impact on poultry in vitro cecal microbiota and metabolome. PLOSone. (2024). https://doi.org/10.1371/journal.pone.0303856 
  7. E G Olson, D K Dittoe, C C Chatman, E L-W Majumder, S C Ricke, General Media Over Enrichment Media Supports Growth of Campylobacter jejuni and Maintains Poultry Cecal Microbiota Enabling Translatable In Vitro Microbial Interaction Experiments, Journal of Applied Microbiology, lxad312, (2023).  https://doi.org/10.1093/jambio/lxad312 
  8. Kim MS, Chang H, Zheng L, Yan Q, Pfleger BF, Klier J, Nelson K, Majumder EL, Huber GW.  A Review of Biodegradable Plastics: Chemistry, Applications, Properties, and Future Research Needs. Chemical reviews 123((16)):9915-9939 (2023). http://dx.doi.org/10.1021/acs.chemrev.2c00876  
  9. Paul A, Jia L, Majumder EL, Yoo CG, Rajendran K, Villarreal E, Kumar D. Poly(3-hydroxybuyrate) production from industrial hemp waste pretreated with a chemical-free hydrothermal process. Bioresource technology 381:129161 (2023). http://dx.doi.org/10.1016/j.biortech.2023.129161  
  10. V.V. Trotter, M. Shatsky, M. N. Price, T. R. Juba, GM. Zane, K.B. De León, E.L.W. Majumder, Qin Gui, R. Ali, M. Prince, K.M. Wetmore, J.V. Kuehl, A.P. Arkin, J.D. Wall, A.M. Deutschbauer, J.M. Chandonia, G.P. Butland. Large-scale Genetic Characterization of a Model Sulfate-Reducing Bacterium. Frontiers in Microbiology, 14 (2023). https://doi.org/10.3389/fmicb.2023.1095191 
  11. Hou, L., Jia, L. Morrison, H.M., Majumder, E.L.W., Kumar, D. Enhanced polyhydroxybutyrate production from acid whey through determination of process and metabolic limiting factors. Bioresource Technology. 342, 125973 (2021). https://doi.org/10.1016/j.biortech.2021.125973  
  12. Thorgersen, M.P., Xue, J.C., Majumder, E.L.W., Trotter, V.V., Price, M.N., Ge, X.X., Poole II, F.L., Owens, T.K., Lui, L.M., Nielsen, T.N., Arkin, A.P., Deutschbauer, A.M., Siuzdak, G., Adams, M.W.W. Deciphering Microbial Metal Toxicity Defense Mechanisms using RB-TnSeq and Activity-Based Metabolomics. Applied and Environmental Microbiology. 87, 21(2021).  https://doi.org/10.1128/AEM.01037-21  
  13. Lui LM, Majumder EL-W, Smith HJ, Carlson HK, von Netzer F, Fields MW, Stahl DA, Zhou J, Hazen TC, Baliga NS, Adams PD and Arkin AP. Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology. Frontiers in. Microbiology.. 12, 642422. (2021). https://doi.org/10.3389/fmicb.2021.642422 
  14. AV Carr, A Otwell, E Majumder, M Ruiz-Watkins, L Hoang, B Webb, S Turkarslan, F Von Netzer, S Gibbons, R Chakraborty, G Siuzdak, D Stahl, and NS Baliga. Sulfur metabolites play key system-level roles in modulating denitrification. mSystems. 6(1), e01025-20 (2021). https://doi.org/10.1128/mSystems.01025-20 
  15. Hou, L., and Majumder, E.L.W. Potential for and Distribution of Enzymatic Biodegradation of Polystyrene by Environmental Microorganisms. Materials, 14, 3, 503 (2021). https://doi.org/10.3390/ma14030503  
  16. Elnahas, M.O., Hou, L., Wall, J.D., Majumder, E.L.W. Bioremediation potential of Streptomyces sp. MOE6 for toxic metals and oil. Polysaccharides 2,1, 47-68, (2021). https://doi.org/10.3390/polysaccharides2010004  
  17. Majumder, E.L.W., Billings, E.M., Benton, H.P. Martin, R.L., Palermo, A., Guijas, C. Rinschen, M.M., Domingo-Almenara1, X., Montenegro-Burke, J.R., Siuzdak, G. Cognitive Analysis of Metabolomics Data for Systems Biology. Nature Protocols. (2021). https://doi.org/10.1038/s41596-020-00455-4 Naturetechnology news feature 9/24/19https://www.nature.com/articles/d41586-019-02853-5 
  18. Hou, L., Kumar, D., Yoo, C.G., Ivanov, I.G., Majumder, E.L.W. Removal Strategies for Microplastics in Wastewater Treatment Plants and Landfills. Chemical Engineering Journal. 406, 126715, (2021). https://doi.org/10.1016/j.cej.2020.126715   
  19. Guijas, C., Montenegro-Burke, J.R., Cintron-Colon, R., Domingo-Almenara, X., Sanchez-Alavez, M., Aguirre, C., Shankar, K., Majumder, E.L.W., Billings, E.M., Siuzdak, G., Conti, B. Metabolic adaptation to calorie restriction. Science Signaling. 13, 648 (2020). https://doi.org/10.1126/scisignal.abb2490  
  20. JW Moon, CJ Paradis, DC Joyner, F Von Netzer, EL Majumder, ER Dixon, M Podar, X Ge, PJ Walian, HJ Smith, X Wu, GM Zane, KF Walker, MP Thorgersen, FL Poole II, LM Lui, BG Adams, KB De León, SS Brewer, DE Williams, KA Lowe, M Rodriguez, TL Mehlhorn, SM Pfiffner, R Chakraborty, AP Arkin, JD Wall, MW Fields, MWW Adams, DA Stahl, DA Elias, TC Hazen. Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer. Chemosphere. 255, 126951 (2020).  https://doi.org/10.1016/j.chemosphere.2020.126951 
  21. Domingo-Almenara, X., Montenegro-Burke, J.R., Guijas, C. Majumder, E.L.W., Benton, H.P., Siuzdak, G. Autonomous METLIN-guided in-source fragment detection increases annotation confidence in untargeted metabolomics. Anal. Chem. 91,5 3246-3253 (2019). https://doi.org/10.1021/acs.analchem.8b03126 
     
  22. Krantz, G.P., Lucas, K., Majumder, E.L.W., Hoang, L.T., Avci, R., Siuzdak, G., Fields, M.W. Bulk phase resource ratio alters metal corrosion rates and extracellular electron transfer mediators in a sulfate-reducing biofilm. Biofouling. 35, 6 (2019).  https://doi.org/10.1080/08927014.2019.1646731  
  23. Ge, X., Vaccaro, B.J., Thorgersen, M.P., Poole II, F.L., Majumder, E.L., Zane, M.G., De León, K.B., Lancaster, W.A., Moon, J.W., Paradis, C.J., von Netzer, F., Stahl, D.A., Adams, P.D., Arkin, A.P., Wall, J.D., Hazen, T.C., Adams, M.W.W. Iron- and Aluminum-Induced Depletion of Molybdenum in Acidic Environments Impedes the Nitrogen Cycle. Environmental Microbiology. 21, 1, 152-163 (2019).  https://doi.org/10.1111%2F1462-2920.14435  
  24. Majumder, E.L.W., Wall, J.D. Bio-transformations of Uranium: Chemical or Biological Processes? Open Journal of Inorganic Chemistry 7, 28-60 (2017). https://doi.org/10.4236/ojic.2017.72003  
  25. Huan, T., Forsberg, E. M., Rinehart, D., Johnson, C. H., Ivanisevic, J., Benton, H. P., Fang, M., Aisporna, A., Hilmers, B., Poole, F. L., Thorgersen, M. P., Adams, M. W. W., Krantz, G., Fields, M. W., Robbins, P. D., Niedernhofer, L. J., Ideker, T., Majumder, E. L., Wall, J. D., Rattray, N. J. W., Goodacre, R., Lairson, L. L., Siuzdak, G. Systems Biology Guided by XCMS Online Metabolomics. Nature Methods 14, 461-462 (2017). https://doi.org/10.1038/nmeth.4260  
  26. Majumder, E.L.W., Wolf, B.M., Liu, H.J., Berg, R.H., Timlin, J.A., & Blankenship, R.E. Subcellular Pigment Distribution is Altered under Far Red Light Acclimation in Cyanobacteria that Contain Chlorophyll f. Photosynthesis Research 134, 183-192 (2017). https://doi.org/10.1007/s11120-017-0428-1  
  27. Majumder, E. L. Olsen, J. D., Qian, P., Collins, A. M., Hunter, C. N., Blankenship, R. E.   Supramolecular organization of photosynthetic complexes in membranes of Roseiflexus castenholzii. Photosynthesis Research 127, 117-130, (2016). https://doi.org/10.1007/s11120-015-0179-9  
  28. Majumder, E. L.-W. & Blankenship, R. E. The Diversity of Photosynthetic Cytochromes in Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling Vol. 41 (eds William A Cramer & Kallas Toivo) Ch. 2, 25-50 (Springer, 2016). https://doi.org/10.1007/978-94-017-7481-9_3  
  29. Zhang, Y., Majumder, E. L.-W., Yue, H., Blankenship, R. E. & Gross, M. L. Structural Analysis of Diheme Cytochrome c by Hydrogen–Deuterium Exchange Mass Spectrometry and Homology Modeling. Biochemistry 53, 5619-5630 (2014). https://doi.org/10.1021/bi500420y  
  30. Majumder, E. L., King, J. D. & Blankenship, R. E. Alternative Complex III from Phototrophic Bacteria and its Electron Acceptor Auracyanin. Biochimica et Biophysica Acta -Bioenergetics 1827, 1383-1391 (2013). https://doi.org/10.1016/j.bbabio.2013.01.008  
  31. Gao, X., Majumder, E. L.-W., Kang, Y., Yue, H. & Blankenship, R. E. Functional Analysis and Expression of the Mono-Heme Containing Cytochrome c Subunit of Alternative Complex III in Chloroflexus aurantiacus. Archives of Biochemistry and Biophysics 535, 197-204 (2013). https://doi.org/10.1016/j.abb.2013.04.002  
  32. Badhwar, J., Karri, S., Cass, C. K., Wunderlich, E. L. & Znosko, B. M. Thermodynamic characterization of RNA duplexes containing naturally occurring 1× 2 nucleotide internal loops. Biochemistry 46, 14715-14724 (2007). https://doi.org/10.1021/bi701024w  

                            E. Majumder lab

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