Publications

  1. Hou, L., Jia, L. Morrison, H.M., Majumder, E.L.W., Kumar, D. Enhanced polyhydroxybutyrate production from acid whey through determination of process and metabolic limiting factors. Bioresource Technology. 342, 125973 (2021). https://doi.org/10.1016/j.biortech.2021.125973  
  1. Thorgersen, M.P., Xue, J.C., Majumder, E.L.W., Trotter, V.V., Price, M.N., Ge, X.X., Poole II, F.L., Owens, T.K., Lui, L.M., Nielsen, T.N., Arkin, A.P., Deutschbauer, A.M., Siuzdak, G., Adams, M.W.W. Deciphering Microbial Metal Toxicity Defense Mechanisms using RB-TnSeq and Activity-Based Metabolomics. Applied and Environmental Microbiology. 87, 21 (2021).    https://doi.org/10.1128/AEM.01037-21  
  1. Lui LM, Majumder EL-W, Smith HJ, Carlson HK, von Netzer F, Fields MW, Stahl DA, Zhou J, Hazen TC, Baliga NS, Adams PD and Arkin AP. Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology. Frontiers in. Microbiology.. 12, 642422. (2021). https://doi.org/10.3389/fmicb.2021.642422 
  1. AV Carr, A Otwell, E Majumder, M Ruiz-Watkins, L Hoang, B Webb, S Turkarslan, F Von Netzer, S Gibbons, R Chakraborty, G Siuzdak, D Stahl, and NS Baliga. Sulfur metabolites play key system-level roles in modulating denitrification. mSystems. 6(1), e01025-20 (2021). https://doi.org/10.1128/mSystems.01025-20 
  1. Hou, L., and Majumder, E.L.W. Potential for and Distribution of Enzymatic Biodegradation of Polystyrene by Environmental Microorganisms. Materials, 14, 3, 503 (2021). https://doi.org/10.3390/ma14030503  
  1. Elnahas, M.O., Hou, L., Wall, J.D., Majumder, E.L.W. Bioremediation potential of Streptomyces sp. MOE6 for toxic metals and oil. Polysaccharides 2,1, 47-68, (2021). https://doi.org/10.3390/polysaccharides2010004  
  1. Majumder, E.L.W., Billings, E.M., Benton, H.P. Martin, R.L., Palermo, A., Guijas, C. Rinschen, M.M., Domingo-Almenara1, X., Montenegro-Burke, J.R., Siuzdak, G. Cognitive Analysis of Metabolomics Data for Systems Biology. Nature Protocols. (2021). https://doi.org/10.1038/s41596-020-00455-4 Nature technology news feature 9/24/19 https://www.nature.com/articles/d41586-019-02853-5 
  1. Hou, L., Kumar, D., Yoo, C.G., Ivanov, I.G., Majumder, E.L.W. Removal Strategies for Microplastics in Wastewater Treatment Plants and Landfills. Chemical Engineering Journal. 406, 126715, (2021). https://doi.org/10.1016/j.cej.2020.126715   
  1. Guijas, C., Montenegro-Burke, J.R., Cintron-Colon, R., Domingo-Almenara, X., Sanchez-Alavez, M., Aguirre, C., Shankar, K., Majumder, E.L.W., Billings, E.M., Siuzdak, G., Conti, B. Metabolic adaptation to calorie restriction. Science Signaling. 13, 648 (2020). https://doi.org/10.1126/scisignal.abb2490  
  1. JW Moon, CJ Paradis, DC Joyner, F Von Netzer, EL Majumder, ER Dixon, M Podar, X Ge, PJ Walian, HJ Smith, X Wu, GM Zane, KF Walker, MP Thorgersen, FL Poole II, LM Lui, BG Adams, KB De León, SS Brewer, DE Williams, KA Lowe, M Rodriguez, TL Mehlhorn, SM Pfiffner, R Chakraborty, AP Arkin, JD Wall, MW Fields, MWW Adams, DA Stahl, DA Elias, TC Hazen. Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer. Chemosphere. 255, 126951 (2020).  https://doi.org/10.1016/j.chemosphere.2020.126951 
  1. Domingo-Almenara, X., Montenegro-Burke, J.R., Guijas, C. Majumder, E.L.W., Benton, H.P., Siuzdak, G. Autonomous METLIN-guided in-source fragment detection increases annotation confidence in untargeted metabolomics. Anal. Chem. 91,5 3246-3253 (2019). https://doi.org/10.1021/acs.analchem.8b03126  
  1. Krantz, G.P., Lucas, K., Majumder, E.L.W., Hoang, L.T., Avci, R., Siuzdak, G., Fields, M.W. Bulk phase resource ratio alters metal corrosion rates and extracellular electron transfer mediators in a sulfate-reducing biofilm. Biofouling. 35, 6 (2019).  https://doi.org/10.1080/08927014.2019.1646731  
  1. Ge, X., Vaccaro, B.J., Thorgersen, M.P., Poole II, F.L., Majumder, E.L., Zane, M.G., De León, K.B., Lancaster, W.A., Moon, J.W., Paradis, C.J., von Netzer, F., Stahl, D.A., Adams, P.D., Arkin, A.P., Wall, J.D., Hazen, T.C., Adams, M.W.W. Iron- and Aluminum-Induced Depletion of Molybdenum in Acidic Environments Impedes the Nitrogen Cycle. Environmental Microbiology. 21, 1, 152-163 (2019).  https://doi.org/10.1111%2F1462-2920.14435  
  1. Majumder, E.L.W., Wall, J.D. Bio-transformations of Uranium: Chemical or Biological Processes? Open Journal of Inorganic Chemistry 7, 28-60 (2017). https://doi.org/10.4236/ojic.2017.72003  
  1. Huan, T., Forsberg, E. M., Rinehart, D., Johnson, C. H., Ivanisevic, J., Benton, H. P., Fang, M., Aisporna, A., Hilmers, B., Poole, F. L., Thorgersen, M. P., Adams, M. W. W., Krantz, G., Fields, M. W., Robbins, P. D., Niedernhofer, L. J., Ideker, T., Majumder, E. L., Wall, J. D., Rattray, N. J. W., Goodacre, R., Lairson, L. L., Siuzdak, G. Systems Biology Guided by XCMS Online Metabolomics. Nature Methods 14, 461-462 (2017). https://doi.org/10.1038/nmeth.4260  
  1. Majumder, E.L.W., Wolf, B.M., Liu, H.J., Berg, R.H., Timlin, J.A., & Blankenship, R.E. Subcellular Pigment Distribution is Altered under Far Red Light Acclimation in Cyanobacteria that Contain Chlorophyll f. Photosynthesis Research 134, 183-192 (2017). https://doi.org/10.1007/s11120-017-0428-1  
  1. Majumder, E. L. Olsen, J. D., Qian, P., Collins, A. M., Hunter, C. N., Blankenship, R. E.   Supramolecular organization of photosynthetic complexes in membranes of Roseiflexus castenholzii. Photosynthesis Research 127, 117-130, (2016). https://doi.org/10.1007/s11120-015-0179-9  
  1. Majumder, E. L.-W. & Blankenship, R. E. The Diversity of Photosynthetic Cytochromes in Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling Vol. 41 (eds William A Cramer & Kallas Toivo) Ch. 2, 25-50 (Springer, 2016). https://doi.org/10.1007/978-94-017-7481-9_3  
  1. Zhang, Y., Majumder, E. L.-W., Yue, H., Blankenship, R. E. & Gross, M. L. Structural Analysis of Diheme Cytochrome c by Hydrogen–Deuterium Exchange Mass Spectrometry and Homology Modeling. Biochemistry 53, 5619-5630 (2014). https://doi.org/10.1021/bi500420y  
  1. Majumder, E. L., King, J. D. & Blankenship, R. E. Alternative Complex III from Phototrophic Bacteria and its Electron Acceptor Auracyanin. Biochimica et Biophysica Acta -Bioenergetics 1827, 1383-1391 (2013). https://doi.org/10.1016/j.bbabio.2013.01.008  
  1. Gao, X., Majumder, E. L.-W., Kang, Y., Yue, H. & Blankenship, R. E. Functional Analysis and Expression of the Mono-Heme Containing Cytochrome c Subunit of Alternative Complex III in Chloroflexus aurantiacus. Archives of Biochemistry and Biophysics 535, 197-204 (2013). https://doi.org/10.1016/j.abb.2013.04.002  
  1. Badhwar, J., Karri, S., Cass, C. K., Wunderlich, E. L. & Znosko, B. M. Thermodynamic characterization of RNA duplexes containing naturally occurring 1× 2 nucleotide internal loops. Biochemistry 46, 14715-14724 (2007). https://doi.org/10.1021/bi701024w  

E. Majumder lab

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