Hou, L., Jia, L. Morrison, H.M., Majumder, E.L.W., Kumar, D. Enhanced polyhydroxybutyrate production from acid whey through determination of process and metabolic limiting factors. Bioresource Technology. 342, 125973 (2021). https://doi.org/10.1016/j.biortech.2021.125973
Thorgersen, M.P., Xue, J.C., Majumder, E.L.W., Trotter, V.V., Price, M.N., Ge, X.X., Poole II, F.L., Owens, T.K., Lui, L.M., Nielsen, T.N., Arkin, A.P., Deutschbauer, A.M., Siuzdak, G., Adams, M.W.W. Deciphering Microbial Metal Toxicity Defense Mechanisms using RB-TnSeq and Activity-Based Metabolomics. Applied and Environmental Microbiology.87, 21(2021).https://doi.org/10.1128/AEM.01037-21
Lui LM, Majumder EL-W, Smith HJ, Carlson HK, von Netzer F, Fields MW, Stahl DA, Zhou J, Hazen TC, Baliga NS, Adams PD and Arkin AP. Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology. Frontiers in. Microbiology..12, 642422. (2021). https://doi.org/10.3389/fmicb.2021.642422
AV Carr, A Otwell, E Majumder, M Ruiz-Watkins, L Hoang, B Webb, S Turkarslan, F Von Netzer, S Gibbons, R Chakraborty, G Siuzdak, D Stahl, and NS Baliga. Sulfur metabolites play key system-level roles in modulating denitrification. mSystems. 6(1), e01025-20 (2021). https://doi.org/10.1128/mSystems.01025-20
Hou, L., and Majumder, E.L.W. Potential for and Distribution of Enzymatic Biodegradation of Polystyrene by Environmental Microorganisms. Materials, 14, 3, 503 (2021). https://doi.org/10.3390/ma14030503
Elnahas, M.O., Hou, L., Wall, J.D., Majumder, E.L.W. Bioremediation potential of Streptomyces sp. MOE6 for toxic metals and oil. Polysaccharides2,1, 47-68, (2021). https://doi.org/10.3390/polysaccharides2010004
Majumder, E.L.W., Billings, E.M., Benton, H.P. Martin, R.L., Palermo, A., Guijas, C. Rinschen, M.M., Domingo-Almenara1, X., Montenegro-Burke, J.R., Siuzdak,G. Cognitive Analysis of Metabolomics Data for Systems Biology. Nature Protocols. (2021). https://doi.org/10.1038/s41596-020-00455-4Naturetechnology news feature 9/24/19https://www.nature.com/articles/d41586-019-02853-5
Hou, L., Kumar, D., Yoo, C.G., Ivanov, I.G., Majumder, E.L.W. Removal Strategies for Microplastics in Wastewater Treatment Plants and Landfills. Chemical Engineering Journal. 406, 126715, (2021). https://doi.org/10.1016/j.cej.2020.126715
Guijas, C., Montenegro-Burke, J.R., Cintron-Colon, R., Domingo-Almenara, X., Sanchez-Alavez, M., Aguirre, C., Shankar, K., Majumder, E.L.W., Billings, E.M., Siuzdak, G., Conti, B. Metabolic adaptation to calorie restriction. Science Signaling. 13, 648 (2020). https://doi.org/10.1126/scisignal.abb2490
JW Moon, CJ Paradis, DC Joyner, F Von Netzer, EL Majumder, ER Dixon, M Podar, X Ge, PJ Walian, HJ Smith, X Wu, GM Zane, KF Walker, MP Thorgersen, FL Poole II, LM Lui, BG Adams, KB De León, SS Brewer, DE Williams, KA Lowe, M Rodriguez, TL Mehlhorn, SM Pfiffner, R Chakraborty, AP Arkin, JD Wall, MW Fields, MWW Adams, DA Stahl, DA Elias, TC Hazen. Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer. Chemosphere. 255, 126951 (2020). https://doi.org/10.1016/j.chemosphere.2020.126951
Domingo-Almenara, X., Montenegro-Burke, J.R., Guijas, C. Majumder, E.L.W., Benton, H.P., Siuzdak, G. Autonomous METLIN-guided in-source fragment detection increases annotation confidence in untargeted metabolomics. Anal. Chem. 91,5 3246-3253 (2019). https://doi.org/10.1021/acs.analchem.8b03126
Krantz, G.P., Lucas, K., Majumder, E.L.W., Hoang, L.T., Avci, R., Siuzdak, G., Fields, M.W. Bulk phase resource ratio alters metal corrosion rates and extracellular electron transfer mediators in a sulfate-reducing biofilm. Biofouling. 35, 6 (2019). https://doi.org/10.1080/08927014.2019.1646731
Ge, X., Vaccaro, B.J., Thorgersen, M.P., Poole II, F.L., Majumder, E.L., Zane, M.G., De León, K.B., Lancaster, W.A., Moon, J.W., Paradis, C.J., von Netzer, F., Stahl, D.A., Adams, P.D., Arkin, A.P., Wall, J.D., Hazen, T.C., Adams, M.W.W. Iron- and Aluminum-Induced Depletion of Molybdenum in Acidic Environments Impedes the Nitrogen Cycle. Environmental Microbiology. 21, 1, 152-163 (2019). https://doi.org/10.1111%2F1462-2920.14435
Majumder, E.L.W., Wall, J.D. Bio-transformations of Uranium: Chemical or Biological Processes? Open Journal of Inorganic Chemistry7, 28-60 (2017). https://doi.org/10.4236/ojic.2017.72003
Huan, T., Forsberg, E. M., Rinehart, D., Johnson, C. H., Ivanisevic, J., Benton, H. P., Fang, M., Aisporna, A., Hilmers, B., Poole, F. L., Thorgersen, M. P., Adams, M. W. W., Krantz, G., Fields, M. W., Robbins, P. D., Niedernhofer, L. J., Ideker, T., Majumder, E. L., Wall, J. D., Rattray, N. J. W., Goodacre, R., Lairson, L. L., Siuzdak, G. Systems Biology Guided by XCMS Online Metabolomics. Nature Methods14, 461-462 (2017). https://doi.org/10.1038/nmeth.4260
Majumder, E.L.W., Wolf, B.M., Liu, H.J., Berg, R.H., Timlin, J.A., & Blankenship, R.E. Subcellular Pigment Distribution is Altered under Far Red Light Acclimation in Cyanobacteria that Contain Chlorophyll f.Photosynthesis Research134, 183-192 (2017). https://doi.org/10.1007/s11120-017-0428-1
Majumder, E. L. Olsen, J. D., Qian, P., Collins, A. M., Hunter, C. N., Blankenship, R. E. Supramolecular organization of photosynthetic complexes in membranes of Roseiflexus castenholzii. Photosynthesis Research127, 117-130, (2016). https://doi.org/10.1007/s11120-015-0179-9
Majumder, E. L.-W. & Blankenship, R. E. The Diversity of Photosynthetic Cytochromes in Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling Vol. 41 (eds William A Cramer & Kallas Toivo) Ch. 2, 25-50 (Springer, 2016). https://doi.org/10.1007/978-94-017-7481-9_3
Zhang, Y., Majumder, E. L.-W., Yue, H., Blankenship, R. E. & Gross, M. L. Structural Analysis of Diheme Cytochrome c by Hydrogen–Deuterium Exchange Mass Spectrometry and Homology Modeling. Biochemistry53, 5619-5630 (2014). https://doi.org/10.1021/bi500420y
Majumder, E. L., King, J. D. & Blankenship, R. E. Alternative Complex III from Phototrophic Bacteria and its Electron Acceptor Auracyanin. Biochimica et Biophysica Acta -Bioenergetics1827, 1383-1391 (2013). https://doi.org/10.1016/j.bbabio.2013.01.008
Gao, X., Majumder, E. L.-W., Kang, Y., Yue, H. & Blankenship, R. E. Functional Analysis and Expression of the Mono-Heme Containing Cytochrome c Subunit of Alternative Complex III in Chloroflexus aurantiacus. Archives of Biochemistry and Biophysics535, 197-204 (2013). https://doi.org/10.1016/j.abb.2013.04.002
Badhwar, J., Karri, S., Cass, C. K., Wunderlich, E. L. & Znosko, B. M. Thermodynamic characterization of RNA duplexes containing naturally occurring 1× 2 nucleotide internal loops. Biochemistry46, 14715-14724 (2007). https://doi.org/10.1021/bi701024w